mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
23 lines
624 B
Text
23 lines
624 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { NEXTCLADE_DATASETGET } from '../../../../modules/nextclade/datasetget/main.nf'
|
|
include { NEXTCLADE_RUN } from '../../../../modules/nextclade/run/main.nf'
|
|
|
|
workflow test_nextclade_run {
|
|
|
|
dataset = 'sars-cov-2'
|
|
reference = 'MN908947'
|
|
tag = '2022-01-18T12:00:00Z'
|
|
|
|
NEXTCLADE_DATASETGET ( dataset, reference, tag )
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
|
|
NEXTCLADE_RUN ( input, NEXTCLADE_DATASETGET.out.dataset )
|
|
}
|
|
|