mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
572abb00b3
* Remove def from module options definition in main
* Fix bismark_deduplicate tests
* Fix bwameth_align tests
* Fixing gatk4 conda tests ("=" instead of ':' in build id)
* Same as previous commit (Fix gatk4 test)
* Fix qualimap bamqc test (no md5 check for pngs)
* Fix seqkit split2 tests. Changed to new test data
* Fix samtools tests. Some were missing initOptions include
* Removing TOOL SUBTOOL template module since now it is included on tools repo
96 lines
3.8 KiB
YAML
96 lines
3.8 KiB
YAML
- name: seqkit split2 single-end length
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command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_length -c tests/config/nextflow.config
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tags:
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- seqkit
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- seqkit_split2
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- seqkit_split2_single_end
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- length
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files:
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- path: output/seqkit/test.split/test_1.part_001.fastq.gz
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md5sum: 6f7d58ba35c254c0817fe9a7c69862e4
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- path: output/seqkit/test.split/test_1.part_002.fastq.gz
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md5sum: cf38c51506e45380fe25abdd1bd5ccc6
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- name: seqkit split2 single-end size
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command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_size -c tests/config/nextflow.config
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tags:
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- seqkit
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- seqkit_split2
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- seqkit_split2_single_end
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- size
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files:
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- path: output/seqkit/test.split/test_1.part_001.fastq.gz
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md5sum: bf835e685d597fc1ab5e5ac7dd689619
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- path: output/seqkit/test.split/test_1.part_002.fastq.gz
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md5sum: 703d95ff4fbb5b7fb4da8a164ba9aa54
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- name: seqkit split2 single-end part
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command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_part -c tests/config/nextflow.config
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tags:
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- seqkit
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- seqkit_split2
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- seqkit_split2_single_end
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- part
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files:
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- path: output/seqkit/test.split/test_1.part_001.fastq.gz
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md5sum: fa25951435471238d5567fd2cae31f55
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- path: output/seqkit/test.split/test_1.part_002.fastq.gz
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md5sum: 1dcf631aaaa5e7e0bd6c9668fbc6e04a
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- path: output/seqkit/test.split/test_1.part_003.fastq.gz
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md5sum: 8bc86ba83a611c54f592f4eae19b680f
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- name: seqkit split2 paired-end length
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command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_length -c tests/config/nextflow.config
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tags:
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- seqkit
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- seqkit_split2
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- seqkit_split2_paired_end
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- length
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files:
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- path: output/seqkit/test.split/test_1.part_001.fastq.gz
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md5sum: 6f7d58ba35c254c0817fe9a7c69862e4
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- path: output/seqkit/test.split/test_1.part_002.fastq.gz
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md5sum: cf38c51506e45380fe25abdd1bd5ccc6
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- path: output/seqkit/test.split/test_2.part_001.fastq.gz
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md5sum: 6b094b1ba7c439fe44c1bb5e99a02ba4
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- path: output/seqkit/test.split/test_2.part_002.fastq.gz
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md5sum: 927097c6ac7522199a9e016333181a8e
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- name: seqkit split2 paired-end size
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command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_size -c tests/config/nextflow.config
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tags:
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- seqkit
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- seqkit_split2
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- seqkit_split2_paired_end
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- size
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files:
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- path: output/seqkit/test.split/test_1.part_001.fastq.gz
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md5sum: bf835e685d597fc1ab5e5ac7dd689619
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- path: output/seqkit/test.split/test_1.part_002.fastq.gz
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md5sum: 703d95ff4fbb5b7fb4da8a164ba9aa54
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- path: output/seqkit/test.split/test_2.part_001.fastq.gz
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md5sum: 09d0dd83b5b1b9b95d316eeed79ea5ba
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- path: output/seqkit/test.split/test_2.part_002.fastq.gz
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md5sum: 8796c3f327b1094244bfcdb36d536526
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- name: seqkit split2 paired-end part
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command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_part -c tests/config/nextflow.config
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tags:
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- seqkit
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- seqkit_split2
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- seqkit_split2_paired_end
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- part
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files:
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- path: output/seqkit/test.split/test_1.part_001.fastq.gz
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md5sum: fa25951435471238d5567fd2cae31f55
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- path: output/seqkit/test.split/test_1.part_002.fastq.gz
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md5sum: 1dcf631aaaa5e7e0bd6c9668fbc6e04a
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- path: output/seqkit/test.split/test_1.part_003.fastq.gz
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md5sum: 8bc86ba83a611c54f592f4eae19b680f
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- path: output/seqkit/test.split/test_2.part_001.fastq.gz
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md5sum: f0055c99cd193fd97466b3cde9dd1b8f
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- path: output/seqkit/test.split/test_2.part_002.fastq.gz
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md5sum: 8a90df768201785f7a7cd5dbb41e846a
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- path: output/seqkit/test.split/test_2.part_003.fastq.gz
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md5sum: 890b90083e8e1606bd13ba34149cedd7
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