mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2025-01-05 13:52:09 -05:00
03de60e6fa
* Bump checkM version and add support for pre-defined database * Add markfile output to checkm/lineagewf and add checkm/qa * Remove unnecessary BAM from tests * Fix channels to ensure single meta * Blah * Use secondary name evwyhere * Remove second incovcatiojn * Don't run module directrly for join * And for the other test * Correct module name * Fix name again * Try and fix out_format 9 not being picked up * Contains to matches to allow regex * Fix tests (finally) * Fix verisoning * [automated] Fix linting with Prettier * Update modules/checkm/qa/main.nf Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com> Co-authored-by: nf-core-bot <core@nf-co.re> Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>
16 lines
600 B
YAML
16 lines
600 B
YAML
- name: checkm qa test_checkm_qa
|
|
command: nextflow run ./tests/modules/checkm/qa -entry test_checkm_qa -c ./tests/config/nextflow.config -c ./tests/modules/checkm/qa/nextflow.config
|
|
tags:
|
|
- checkm/qa
|
|
- checkm
|
|
files:
|
|
- path: output/checkm/test.qa.txt
|
|
md5sum: 645f4282569afb4b171396732b2d2582
|
|
|
|
- name: checkm qa test_checkm_qa_fasta
|
|
command: nextflow run ./tests/modules/checkm/qa -entry test_checkm_qa_fasta -c ./tests/config/nextflow.config -c ./tests/modules/checkm/qa/nextflow.config
|
|
tags:
|
|
- checkm/qa
|
|
- checkm
|
|
files:
|
|
- path: output/checkm/test.qa.fasta
|