mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
55 lines
1.6 KiB
YAML
55 lines
1.6 KiB
YAML
name: prodigal
|
|
description: Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
|
|
keywords:
|
|
- sort
|
|
tools:
|
|
- prodigal:
|
|
description: Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
|
|
homepage: https://github.com/hyattpd/Prodigal
|
|
documentation: https://github.com/hyattpd/prodigal/wiki
|
|
tool_dev_url: https://github.com/hyattpd/Prodigal
|
|
doi: "10.1186/1471-2105-11-119"
|
|
licence: ["GPL v3"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- genome:
|
|
type: file
|
|
description: fasta/fasta.gz file
|
|
- output_format:
|
|
type: string
|
|
description: Output format ("gbk"/"gff"/"sqn"/"sco")
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- nucleotide_fasta:
|
|
type: file
|
|
description: nucleotide sequences file
|
|
pattern: "*.{fna}"
|
|
- amino_acid_fasta:
|
|
type: file
|
|
description: protein translations file
|
|
pattern: "*.{faa}"
|
|
- all_gene_annotations:
|
|
type: file
|
|
description: complete starts file
|
|
pattern: "*.{_all.txt}"
|
|
- gene_annotations:
|
|
type: file
|
|
description: gene annotations in output_format given as input
|
|
pattern: "*.{output_format}"
|
|
|
|
authors:
|
|
- "@grst"
|