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* first commit * edit main.nf * edit tests * run prettier * fix test * indent script * Update modules/snapaligner/paired/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/snapaligner/paired/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * fix version nr * update meta * fix versions Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
17 lines
694 B
Text
17 lines
694 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SNAPALIGNER_INDEX } from '../../../../modules/snapaligner/index/main.nf'
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include { SNAPALIGNER_PAIRED } from '../../../../modules/snapaligner/paired/main.nf'
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workflow test_snapaligner_paired {
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input = [
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[ id:'test', single_end:false ], // meta map
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[file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true), file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)]
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]
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SNAPALIGNER_INDEX ( file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true),[],[],[])
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SNAPALIGNER_PAIRED ( input, SNAPALIGNER_INDEX.out.index )
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}
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