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b67556e29f
* Add FastK/Merge * Update modules/fastk/merge/main.nf * Update modules/fastk/merge/meta.yml Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk>
39 lines
1.3 KiB
Text
39 lines
1.3 KiB
Text
process FASTK_MERGE {
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tag "$meta.id"
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label 'process_medium'
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if (params.enable_conda) {
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error "Conda environments cannot be used when using the FastK tool. Please use docker or singularity containers."
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}
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// WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
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container 'ghcr.io/nbisweden/fastk_genescopefk_merquryfk:1.0'
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input:
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tuple val(meta), path(hist), path(ktab), path(prof)
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output:
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tuple val(meta), path("*.hist") , emit: hist
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tuple val(meta), path("*.ktab*", hidden: true) , emit: ktab, optional: true
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tuple val(meta), path("*.{prof,pidx}*", hidden: true), emit: prof, optional: true
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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def prefix = task.ext.prefix ?: "${meta.id}"
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def FASTK_VERSION = 'f18a4e6d2207539f7b84461daebc54530a9559b0' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
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"""
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Fastmerge \\
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$args \\
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-T$task.cpus \\
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${prefix} \\
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$hist
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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fastk: $FASTK_VERSION
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END_VERSIONS
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"""
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}
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