nf-core_modules/tests/modules/ascat
SusiJo 98ffb09002
Added output files to ASCAT (#1820)
* add unzip alleles + loci

* fix the partial absolute prefix path

* exchanged deprecated function + added metrics

* updated meta

* tested logRCorrection + cram input

* added BED for WES

* added outputs + alleleCounter version

* test samtools chr operations, fixed cancerit conda

* ch formatting, fasta, bed input

* comment out local tests

* added metrics, bed, ref_fasta

* rm print statement

* added stub outputs

* rm versions.yml

* fix linting

* rm fictitious md5sums for stub-run

* try fixing top-level of stub versions.yml

* ordered inputs alphabetically, ref_fasta -> fasta

* rm R system command, adjust meta.yml

* prettier yml

* added outputs + prefix to outputs

* added test-yml outputs

* change underscores to dots
2022-06-28 14:45:57 +02:00
..
main.nf Update ASCAT module (#1805) 2022-06-23 17:06:00 +02:00
nextflow.config Update ASCAT module (#1805) 2022-06-23 17:06:00 +02:00
test.yml Added output files to ASCAT (#1820) 2022-06-28 14:45:57 +02:00