Charles Plessy ca321ce69d New module last/postmask to filter alignment files (#526) ... The `last-postmask` tool distributed with [LAST](https://gitlab.com/mcfrith/last) filters alignments in a MAF file to remove those with too many masked (lower-case) positions compared with their score. As other filter modules like `last/split`, its output file risks to overwrite its input file as their names are constructed from the sample ID when multiple filters are chained in the pipeline. I added a check that gives a clearer error message in this case. Please let me know what you think about; I can add this test to the existing LAST modules as well. This new module is part of the work discribed in Issue #464. During this development, we fix the version of LAST to 1219 to ensure consistency. We will upgrade it later.		2021-06-08 11:14:08 +02:00
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dotplot	New last/dotplot module for pairwise similarity plots (#529)	2021-06-08 11:13:51 +02:00
lastal	New last/lastal module to align query sequences on a target index (#510)	2021-05-25 22:10:48 +01:00
lastdb	Update comments with new style (#497)	2021-05-12 14:56:46 +01:00
mafswap	New module last/mafswap to reorder sequences in alignments (#500)	2021-05-19 08:59:23 +01:00
postmask	New module last/postmask to filter alignment files (#526)	2021-06-08 11:14:08 +02:00
split	New last/split module to find split alignments. (#511)	2021-05-24 20:15:57 +01:00
train	New last/train module to train alignment parameters. (#492)	2021-05-19 08:37:08 +01:00