Maxime U. Garcia 31d4099f38 Add subworkflows for ensemblvep and snpeff (#1124) ... * greatly simplify syntax * feat: add subworkflows to annotate (+ bgzip/tabix index) with ensemblvep and snpeff * feat: get versions from all tools * add commented infor for new annotation modules		2021-12-07 17:12:35 +01:00
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align_bowtie2	Subworkflow Infrastructure (#662)	2021-10-08 16:02:42 +01:00
annotation_ensemblvep	Add subworkflows for ensemblvep and snpeff (#1124)	2021-12-07 17:12:35 +01:00
annotation_snpeff	Add subworkflows for ensemblvep and snpeff (#1124)	2021-12-07 17:12:35 +01:00
bam_sort_samtools	Fix subworkflows seperate from modules (#933)	2021-11-15 18:18:46 +00:00
bam_stats_samtools	Update to allow cram + update needed to use the gatk4 modules in sarek (#976)	2021-10-29 13:01:05 +02:00
gatk_create_som_pon	use underscores in anchors and references (#1080)	2021-11-18 18:09:09 +00:00
gatk_tumor_normal_somatic_variant_calling	Add gatk somatic paired calling subworkflow (#1067)	2021-11-17 11:34:07 +01:00
gatk_tumor_only_somatic_variant_calling	Add gatk somatic tumour calling subworkflow (#1064)	2021-11-17 11:07:17 +01:00
sra_fastq	feat: add sub-workflow for SRA (#836)	2021-10-14 11:50:31 +02:00