| .. |
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abacas
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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adapterremoval
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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agrvate
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Update agrvate to latest version (#728)
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2021-09-21 20:28:53 +01:00 |
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allelecounter
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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arriba
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Added module arriba (#611)
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2021-07-22 15:19:42 +01:00 |
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artic
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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bamaligncleaner
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Add module: bamaligncleaner (#676)
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2021-09-15 10:31:49 +02:00 |
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bandage/image
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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bbmap
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Module to map reads with BBMap (#717)
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2021-09-20 11:27:34 +02:00 |
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bcftools
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Add bcftools/query module (#670)
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2021-09-14 09:19:01 +02:00 |
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bedtools
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Add bedtools/makewindows module (#658)
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2021-09-07 14:36:06 -04:00 |
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bismark
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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blast
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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bowtie
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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bowtie2
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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bwa
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update: BWA/ALN (#653)
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2021-08-17 15:55:54 +02:00 |
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bwamem2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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bwameth
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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cat
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Refactor cat/cat module (#723)
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2021-09-21 11:17:00 +01:00 |
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chromap
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Chromap patch (#712)
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2021-09-16 09:23:07 +01:00 |
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cnvkit
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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cooler
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update typos. change quote from ' to ". (#652)
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2021-08-16 11:57:22 +02:00 |
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cutadapt
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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damageprofiler
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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deeptools
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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delly/call
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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diamond
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Diamond (#710)
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2021-09-23 09:13:04 +01:00 |
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dragonflye
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add module for dragonflye (#633)
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2021-08-16 11:51:30 +02:00 |
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dshbio
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Add dsh-bio export-segments module (#631)
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2021-08-17 15:53:41 +02:00 |
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ensemblvep
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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expansionhunter
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Expansionhunter (#666)
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2021-08-16 17:47:42 +02:00 |
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fastani
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module fastani (#695)
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2021-09-21 20:20:26 +01:00 |
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fastp
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enhance module fastp: add save_merged (#598) (#614)
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2021-07-23 10:44:00 +01:00 |
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fastqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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fasttree
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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fgbio
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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flash
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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gatk4
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Update for mutect2: add output channel for stats file (#716)
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2021-09-17 09:56:56 +01:00 |
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genmap
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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gffread
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Fix bug in gffread (#686)
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2021-09-15 19:55:08 +01:00 |
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glnexus
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Add glnexus (#729)
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2021-09-22 13:31:01 +01:00 |
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graphmap2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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gubbins
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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gunzip
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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hifiasm
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Add hifiasm module (#596)
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2021-07-20 21:50:22 +01:00 |
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hisat2
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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hmmer/hmmalign
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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homer
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Homer Modules (#75)
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2021-09-08 15:40:34 +00:00 |
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iqtree
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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ivar
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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kallisto/index
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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kallistobustools
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Fix kallistobustools version extraction (#691)
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2021-09-15 17:56:12 +01:00 |
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kleborate
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Add module kleborate (#711)
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2021-09-21 20:45:42 +01:00 |
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kraken2/kraken2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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last
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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lib
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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lofreq
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fix: lofreq/callparallel missing arg (#562) (#586)
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2021-07-19 09:19:27 +01:00 |
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macs2/callpeak
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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malt
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update: MALT build version bump (#699)
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2021-09-15 16:46:29 +01:00 |
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maltextract
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add: MALTEXTRACT (#725)
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2021-09-21 19:57:27 +01:00 |
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mash/sketch
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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metaphlan3
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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methyldackel
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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minia
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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minimap2
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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mosdepth
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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msisensor
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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multiqc
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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muscle
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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nanolyse
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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nanoplot
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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nextclade
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Update Nextclade to output all files by default (#638)
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2021-07-28 19:49:50 +01:00 |
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optitype
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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pairix
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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pairtools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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pangolin
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Update pangolin to 3.1.11 (#721)
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2021-09-20 19:59:05 +01:00 |
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pbccs
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new module: pbccs (#688)
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2021-09-16 11:48:18 +01:00 |
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phantompeakqualtools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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picard
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modify markduplicates module (#681)
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2021-09-15 11:02:28 +02:00 |
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plasmidid
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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plink/vcf
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Adding plink/vcf module (#656)
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2021-09-14 08:51:40 +02:00 |
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preseq/lcextrap
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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prodigal
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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prokka
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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pycoqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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pydamage
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Add PyDamage filter (#713)
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2021-09-16 15:05:49 +02:00 |
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qcat
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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qualimap
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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quast
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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rapidnj
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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rasusa
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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raxmlng
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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rsem
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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rseqc
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Require r-base>=3.5 for RSeqC Conda envs (#654)
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2021-08-05 18:59:56 +01:00 |
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salmon
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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samtools
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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seacr/callpeak
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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seqkit/split2
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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seqtk
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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sequenzautils
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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seqwish/induce
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Update seqwish reported version to match bioconda version. (#678)
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2021-08-26 15:33:38 -05:00 |
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shovill
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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snpdists
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module: snp-dists (#697)
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2021-09-15 16:36:49 +01:00 |
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snpeff
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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snpsites
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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sortmerna
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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spades
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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staphopiasccmec
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add staphopia-sccmec module (#702)
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2021-09-15 17:24:11 +01:00 |
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star
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Added PL tag in read group information for downstream analysis (#649)
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2021-08-04 11:16:51 +02:00 |
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strelka/germline
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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stringtie
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Add option -p to set the # of cpus on stringtie (#601)
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2021-07-21 15:38:40 +02:00 |
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subread/featurecounts
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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tabix
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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tiddit/sv
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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trimgalore
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
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ucsc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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umitools
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Add --paired flag to umitools dedup and bump to 1.1.2 (#583)
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2021-07-16 14:21:08 +01:00 |
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unicycler
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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untar
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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unzip
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module: unzip (#642)
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2021-08-02 09:40:57 +02:00 |
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variantbam
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Add variantbam (#618)
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2021-07-26 19:07:29 +01:00 |
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vcftools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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yara
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
ca53f7525b