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e560fbbc3e
* first commit with imputeme as a module. Extensive re-write of imputeme-code, resulting in release v1.0.7 that is runnable in the next-flow framework. Co-authored-by: EC2 Default User <ec2-user@ip-172-31-21-198.us-west-2.compute.internal> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
41 lines
1.1 KiB
YAML
41 lines
1.1 KiB
YAML
name: imputeme_vcftoprs
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description: inputs a VCF-file with whole genome DNA sequencing. Outputs a JSON with polygenic risk scores.
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keywords:
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- PRS, VCF
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tools:
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- imputeme:
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description:
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homepage: www.impute.me
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documentation: https://hub.docker.com/repository/docker/lassefolkersen/impute-me
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tool_dev_url: https://github.com/lassefolkersen/impute-me
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doi: "https://doi.org/10.3389/fgene.2020.00578"
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licence: LGPL3
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ vcf:'test', single_end:false ]
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- vcf:
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type: file
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description: vcf file
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pattern: "*.{vcf}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- json:
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type: file
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description: json containing Z-scores for all calculated PRS
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pattern: "*.{json}"
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authors:
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- "@lassefolkersen"
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