nf-core_modules/modules/scramble/clusteridentifier/meta.yml
nvnieuwk f2264c1052
New module: scramble (#2015)
* added scramble/clusteridentifier

* linting

* added cluster_analysis

* added a comment to the mei ref

* added reference comments

* linting
2022-09-07 13:19:18 +02:00

51 lines
1.3 KiB
YAML

name: "scramble_clusteridentifier"
description: The cluster_identifier tool of Scramble identifies soft clipped clusters
keywords:
- bam
- cram
- soft-clipped clusters
tools:
- "scramble":
description: "Soft Clipped Read Alignment Mapper"
homepage: "https://github.com/GeneDx/scramble"
documentation: "https://github.com/GeneDx/scramble"
tool_dev_url: "https://github.com/GeneDx/scramble"
doi: ""
licence: "['CC']"
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- input:
type: file
description: BAM/CRAM file
pattern: "*.{bam,cram}"
- input_index:
type: file
description: Index of the BAM/CRAM file
pattern: "*.{bai,crai}"
- fasta:
type: file
description: The reference FASTA file (mandatory when using CRAM files)
pattern: "*.{fasta,fa}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- clusters:
type: file
description: Tab-delimited file containing the soft-clipped clusters
pattern: "*.clusters.txt"
authors:
- "@nvnieuwk"