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d16f1ea4d7
* add module for panaroo * update pirate test yaml * update panaroo test yaml * update pirate test yaml md5s * Update main.nf * Update main.nf * pin bioperl version
19 lines
600 B
Text
19 lines
600 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PIRATE } from '../../../modules/pirate/main.nf'
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workflow test_pirate {
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input = [
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[ id:'test', single_end:false ], // meta map
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[
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file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['test1_gff'], checkIfExists: true),
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file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['test2_gff'], checkIfExists: true),
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file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['test3_gff'], checkIfExists: true)
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]
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]
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PIRATE ( input )
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}
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