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d9dfbe9d9d
* add pydamage module * remove TODOs * split module by subcommands * update version parsing * remove forgotten TODOs * update module names * remove old holistic module * Update modules/pydamage/analyze/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * add keywords * simplify PR to analyze subcommand Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
14 lines
516 B
Text
14 lines
516 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PYDAMAGE_ANALYZE } from '../../../../modules/pydamage/analyze/main.nf' addParams( options: [:] )
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workflow test_pydamage {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true) ]
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PYDAMAGE_ANALYZE ( input )
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}
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