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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
43 lines
1.3 KiB
YAML
43 lines
1.3 KiB
YAML
name: bedtools_makewindows
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description: Makes adjacent or sliding windows across a genome or BED file.
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keywords:
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- bed
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- windows
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tools:
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- bedtools:
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description: A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
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homepage: https://bedtools.readthedocs.io
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documentation: https://bedtools.readthedocs.io/en/latest/content/tools/makewindows.html
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tool_dev_url: None
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doi: "10.1093/bioinformatics/btq033"
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- regions:
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type: file
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description: BED file OR Genome details file (<chromName><TAB><chromSize>)
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pattern: "*.{bed,fai,tab}"
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- use_bed:
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type: boolean
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description: true = input is a BED file; false = input is a genome details file
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- tab:
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type: file
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description: Windows TAB file (BED or BED-like format)
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pattern: "*.tab"
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authors:
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- "@kevbrick"
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