mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
cc8439a167
* add software/pairtools * create a branch for pairtools/flip * fix the issue of PG line in output * remove custom code from test. Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
43 lines
1 KiB
YAML
43 lines
1 KiB
YAML
name: pairtools_flip
|
|
description: Flip pairs to get an upper-triangular matrix
|
|
keywords:
|
|
- flip
|
|
tools:
|
|
- pairtools:
|
|
description: CLI tools to process mapped Hi-C data
|
|
homepage: http://pairtools.readthedocs.io/
|
|
documentation: http://pairtools.readthedocs.io/
|
|
tool_dev_url: https://github.com/mirnylab/pairtools
|
|
doi: ""
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- sam:
|
|
type: file
|
|
description: pair file
|
|
- chromsizes:
|
|
type: file
|
|
description: chromosome size file
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
- flip:
|
|
type: file
|
|
description: output file of flip
|
|
pattern: "*.{flip.gz}"
|
|
|
|
authors:
|
|
- "@jianhong"
|