nf-core_modules/tests/software/rasusa/main.nf
Thanh Lee c736817598
🧸 Updated rasusa (#437)
* changed genome size input position

* fixed...😊
2021-04-12 21:47:55 +01:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { RASUSA } from '../../../software/rasusa/main.nf' addParams( options: ['suffix':'_100X'])
workflow test_rasusa {
input = [ [ id:'test', single_end:false], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)
],
"1000000b"
]
depth_cutoff = 100
RASUSA ( input, depth_cutoff )
}