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* output constant sites as a val as well as a file so it can be passed into iqtree * Using an env variable because that's far safer! * Update software/snpsites/main.nf * remove hardcoded param that should be a user option * Update software/snpsites/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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343 B
YAML
9 lines
No EOL
343 B
YAML
- name: snpsites
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command: nextflow run ./tests/software/snpsites -entry test_snpsites -c tests/config/nextflow.config
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tags:
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- snpsites
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files:
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- path: output/snpsites/filtered_alignment.fas
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md5sum: f96c7513003e878e16fa9eac9fcda0f4
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- path: output/snpsites/constant.sites.txt
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md5sum: 8b9b226e3787f7baaefce07405af22c9 |