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https://github.com/MillironX/nf-core_modules.git
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043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
23 lines
868 B
YAML
23 lines
868 B
YAML
- name: spades single end
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command: nextflow run ./tests/software/spades -entry test_spades_single_end -c tests/config/nextflow.config
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tags:
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- spades
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files:
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- path: output/spades/test.assembly.gfa
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md5sum: b2616d2beba83ab7d361b54778d1e759
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- path: output/spades/test.contigs.fa
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md5sum: 2690fefde046bc904e90df09a065257a
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- path: output/spades/test.scaffolds.fa
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md5sum: 2690fefde046bc904e90df09a065257a
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- path: output/spades/test.spades.log
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- name: spades paired end
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command: nextflow run ./tests/software/spades -entry test_spades_paired_end -c tests/config/nextflow.config
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tags:
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- spades
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files:
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- path: output/spades/test.assembly.gfa
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md5sum: faf76135ee390606b899c0197dc38e04
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- path: output/spades/test.contigs.fa
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md5sum: 6148e25b33890c80f176f90f2dd88989
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- path: output/spades/test.spades.log
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