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9842a10833
* add software/pairtools * create a branch for pairtools/parse * fix the issue of bioconda output is different from docker. * remove customized code from test. Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
14 lines
552 B
Text
14 lines
552 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PAIRTOOLS_PARSE } from '../../../../software/pairtools/parse/main.nf' addParams( options: ['suffix':'.raw'] )
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workflow test_pairtools_parse {
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input = [ [ id:'test', single_end:false ], // meta map
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file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.sam", checkIfExists: true) ]
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sizes = file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.chrom.sizes", checkIfExists:true)
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PAIRTOOLS_PARSE ( input, sizes )
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}
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