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e0b7952b56
* add software/pairtools * create a branch for pairtools/select * fix the different output of conda and docker. * rmove the md5sum for gzip files. * Update software/pairtools/select/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * update test file and documentation. Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
13 lines
484 B
Text
13 lines
484 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PAIRTOOLS_SELECT } from '../../../../software/pairtools/select/main.nf' addParams( options: [args:"(pair_type == 'RU') or (pair_type == 'UR') or (pair_type == 'UU')"] )
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workflow test_pairtools_select {
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input = [ [ id:'test', single_end:false ], // meta map
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file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.pairsam", checkIfExists: true) ]
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PAIRTOOLS_SELECT ( input )
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}
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