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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
26 lines
777 B
Text
26 lines
777 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { RAXMLNG as RAXMLNG_NO_BOOTSTRAP } from '../../../modules/raxmlng/main.nf' addParams( options: [args:'--model GTR+G'] )
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include { RAXMLNG as RAXMLNG_BOOTSTRAP } from '../../../modules/raxmlng/main.nf' addParams( options: [args:'--all --model GTR+G --bs-trees 1000'] )
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//
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// Test without bootstrapping
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//
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workflow test_raxmlng_no_bootstrap {
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input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]
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RAXMLNG_NO_BOOTSTRAP ( input )
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}
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//
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// Test with bootstrapping
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//
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workflow test_raxmlng_bootstrap {
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input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]
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RAXMLNG_BOOTSTRAP ( input )
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}
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