millironx/nf-core_modules
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nf-core_modules/modules/gatk4
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FriederikeHanssen a6e0629e24
Change intervals to be part of sample specific input (#1189) 
* Change intervals to be part of sample specific input

* Fix some tests

* Update checksum

* Update intervals

* Update intervals

* Try out gavins idea for adding the file

* update test line

* update test line

* update test line

* revert contains line
2021-12-23 12:58:20 +01:00
..
applybqsr Change intervals to be part of sample specific input (#1189) 2021-12-23 12:58:20 +01:00
applyvqsr Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
baserecalibrator Change intervals to be part of sample specific input (#1189) 2021-12-23 12:58:20 +01:00
bedtointervallist Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
calculatecontamination Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
createsequencedictionary Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
createsomaticpanelofnormals Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
estimatelibrarycomplexity Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
fastqtosam Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
filtermutectcalls Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
gatherbqsrreports Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
genomicsdbimport Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
genotypegvcfs Change intervals to be part of sample specific input (#1189) 2021-12-23 12:58:20 +01:00
getpileupsummaries Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
haplotypecaller Change intervals to be part of sample specific input (#1189) 2021-12-23 12:58:20 +01:00
indexfeaturefile Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
intervallisttools Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
learnreadorientationmodel Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
markduplicates Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
mergebamalignment Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
mergevcfs Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
mutect2 Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
revertsam Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
samtofastq Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
splitncigarreads Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
variantfiltration Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
variantrecalibrator add module: Variantrecalibrator (#1088) 2021-12-16 10:54:49 +00:00