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17 lines
357 B
Text
17 lines
357 B
Text
#!/usr/bin/env nextflow
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nextflow.preview.dsl = 2
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// import shovill
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include {shovill} from '../main.nf' params(params)
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// define input channel
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readsPath = '../../../test-datasets/tools/shovill/input/SRR3609257_{1,2}.fastq.gz'
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Channel
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.fromFilePairs( "${readsPath}", flat: true )
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.set{ ch_reads }
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// main workflow
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workflow {
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shovill(ch_reads)
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}
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