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* added files * removed file * added file * changed files * changed files * edited file * edited file * edited files * edited files * edited files * edited tags * edited tags * edited tags * edited tags Co-authored-by: kaurravneet4123 <kaurravneet4123@yahoo.com@users.noreply.github.com>
39 lines
1.1 KiB
YAML
39 lines
1.1 KiB
YAML
name: seqtk_sample
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description: Subsample reads from FASTQ files
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keywords:
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- sample
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tools:
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- seqtk:
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description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk sample command subsamples sequences.
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homepage: https://github.com/lh3/seqtk
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documentation: https://docs.csc.fi/apps/seqtk/
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: List of input FastQ files of size 1 and 2 for single-end and paired-end data,respectively.
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pattern: "*.{fastq.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- reads:
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type: file
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description: Subsampled FastQ files of size 1 and 2 for single-end and paired-end data,respectively.
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pattern: "*.{fastq.gz}"
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authors:
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- "@kaurravneet4123"
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