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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
47 lines
1.3 KiB
YAML
47 lines
1.3 KiB
YAML
name: quast
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description: Quality Assessment Tool for Genome Assemblies
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keywords:
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- quast
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- assembly
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- quality
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tools:
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- quast:
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description: |
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QUAST calculates quality metrics for genome assemblies
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homepage: http://bioinf.spbau.ru/quast
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doi: https://doi.org/10.1093/bioinformatics/btt086
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licence: ["GPL-2.0-only"]
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input:
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- consensus:
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type: file
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description: |
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Fasta file containing the assembly of interest
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- fasta:
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type: file
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description: |
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The genome assembly to be evaluated. Has to contain at least a non-empty string dummy value.
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- use_fasta:
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type: boolean
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description: Whether to use the provided fasta reference genome file
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- gff:
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type: file
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description: The genome GFF file. Has to contain at least a non-empty string dummy value.
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- use_gff:
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type: boolean
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description: Whether to use the provided gff reference annotation file
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output:
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- quast:
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type: directory
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description: Directory containing complete quast report
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pattern: "{prefix}.lineage_report.csv"
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- report:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@drpatelh"
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- "@kevinmenden"
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