mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
59 lines
2 KiB
YAML
59 lines
2 KiB
YAML
name: dsh_splitbed
|
|
description: Split features in gzipped BED format
|
|
keywords:
|
|
- bed
|
|
tools:
|
|
- dsh:
|
|
description: |
|
|
Reads, features, variants, assemblies, alignments, genomic range trees, pangenome
|
|
graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3
|
|
or later.
|
|
homepage: https://github.com/heuermh/dishevelled-bio
|
|
documentation: https://github.com/heuermh/dishevelled-bio
|
|
params:
|
|
- outdir:
|
|
type: string
|
|
description: |
|
|
The pipeline's output directory. By default, the module will
|
|
output files into `$params.outdir/<SOFTWARE>`
|
|
- publish_dir_mode:
|
|
type: string
|
|
description: |
|
|
Value for the Nextflow `publishDir` mode parameter.
|
|
Available: symlink, rellink, link, copy, copyNoFollow, move.
|
|
- enable_conda:
|
|
type: boolean
|
|
description: |
|
|
Run the module with Conda using the software specified
|
|
via the `conda` directive
|
|
- singularity_pull_docker_container:
|
|
type: boolean
|
|
description: |
|
|
Instead of directly downloading Singularity images for use with Singularity,
|
|
force the workflow to pull and convert Docker containers instead.
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bed:
|
|
type: file
|
|
description: Features in gzipped BED format to split
|
|
pattern: "*.{bed.gz}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bed:
|
|
type: file
|
|
description: Features in split gzipped BED formatted files
|
|
pattern: "*.{bed.gz}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@heuermh"
|