nf-core_modules/modules
Harshil Patel cf15ece503
Address Jose's comments in #780 (#781)
* Remove def software line

* Replace version with versions in emit statement

* Fix default software names

* Address Jose's comments in #780
2021-10-01 15:54:50 +02:00
..
abacas Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
adapterremoval Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
agrvate Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
allelecounter Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
amps Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
arriba Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
artic Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bamaligncleaner Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bandage/image Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bbmap Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bcftools Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bedtools Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bismark Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
blast Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bowtie Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bowtie2 Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bwa Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bwamem2 Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
bwameth Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
cat Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
chromap Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
cnvkit Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
cooler Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
custom/dumpsoftwareversions Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
cutadapt Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
damageprofiler Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
deeptools Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
delly/call Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
diamond Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
dragonflye Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
dshbio Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
ensemblvep Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
expansionhunter Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
fastani Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
fastp Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
fastqc Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
fasttree Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
fgbio Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
flash Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
gatk4 Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
genmap Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
gffread Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
glnexus Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
graphmap2 Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
gubbins Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
gunzip Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
hifiasm Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
hisat2 Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
hmmer/hmmalign Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
homer Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
iqtree Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
ivar Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
kallisto/index Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
kallistobustools Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
kleborate Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
kraken2/kraken2 Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
last Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
lib Bulk update modules to use versions.yml (#739) 2021-09-27 09:41:24 +01:00
lima Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
lofreq Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
macs2/callpeak Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
malt Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
maltextract Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
mash/sketch Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
metaphlan3 Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
methyldackel Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
minia Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
minimap2 Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
mosdepth Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
msisensor Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
multiqc Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
muscle Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
nanolyse Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
nanoplot Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
nextclade Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
optitype Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
pairix Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
pairtools Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
pangolin Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
pbccs Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
phantompeakqualtools Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
picard Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
plasmidid Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
plink/vcf Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
preseq/lcextrap Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
prodigal Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
prokka Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
pycoqc Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
pydamage Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
qcat Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
qualimap Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
quast Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
rapidnj Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
rasusa Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
raxmlng Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
rsem Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
rseqc Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
salmon Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
samtools Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
seacr/callpeak Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
seqkit/split2 Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
seqtk Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
sequenzautils Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
seqwish/induce Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
shovill Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
snpdists Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
snpeff Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
snpsites Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
sortmerna Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
spades Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
staphopiasccmec Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
star Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
strelka/germline Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
stringtie Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
subread/featurecounts Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
tabix Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
tiddit/sv Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
trimgalore Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
ucsc Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
umitools Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
unicycler Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
untar Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
unzip Address Jose's comments in #780 (#781) 2021-10-01 15:54:50 +02:00
variantbam Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00
vcftools Address Jose's comments in #780 (#781) 2021-10-01 15:54:50 +02:00
yara Remove def software lines and emit versions channel as plural (#780) 2021-10-01 14:04:56 +01:00