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83a500e6b0
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint * Initial commit for test data config * Rename test data * Include test config * Update indents * Update test for FastQC via config * Remove quotes of bottom-level variables * Use underscores in key names * Get tests working for fastp * Remove whitespace at beginning of file
29 lines
792 B
Text
29 lines
792 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FASTP } from '../../../software/fastp/main.nf' addParams( options: [:] )
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/*
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* Test with single-end data
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*/
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workflow test_fastp_single_end {
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input = [ [ id:'test', single_end:true ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
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]
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FASTP ( input )
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}
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/*
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* Test with paired-end data
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*/
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workflow test_fastp_paired_end {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
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]
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FASTP ( input )
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}
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