mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
52 lines
1.4 KiB
YAML
52 lines
1.4 KiB
YAML
name: bwa_index
|
|
description: Create BWA index for reference genome
|
|
keywords:
|
|
- index
|
|
- fasta
|
|
- genome
|
|
tools:
|
|
- bwa:
|
|
description: |
|
|
BWA is a software package for mapping DNA sequences against
|
|
a large reference genome, such as the human genome.
|
|
homepage: http://bio-bwa.sourceforge.net/
|
|
documentation: http://www.htslib.org/doc/samtools.html
|
|
arxiv: arXiv:1303.3997
|
|
params:
|
|
- outdir:
|
|
type: string
|
|
description: |
|
|
The pipeline's output directory. By default, the module will
|
|
output files into `$params.outdir/<SOFTWARE>`
|
|
- publish_dir_mode:
|
|
type: string
|
|
description: |
|
|
Value for the Nextflow `publishDir` mode parameter.
|
|
Available: symlink, rellink, link, copy, copyNoFollow, move.
|
|
- conda:
|
|
type: boolean
|
|
description: |
|
|
Run the module with Conda using the software specified
|
|
via the `conda` directive
|
|
input:
|
|
- fasta:
|
|
type: file
|
|
description: |
|
|
Input genome fasta file
|
|
- options:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing module options for passing command-line arguments and
|
|
output file paths.
|
|
output:
|
|
- index:
|
|
type: file
|
|
description: BWA genome index files
|
|
pattern: "*.{fasta}.{amb,ann,bwt,pac,sa}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.version.txt"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@maxulysse"
|