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33 lines
1,012 B
Text
33 lines
1,012 B
Text
process BANDAGE_IMAGE {
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tag "${meta.id}"
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label 'process_low'
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conda (params.enable_conda ? 'bioconda::bandage=0.8.1' : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/bandage:0.8.1--hc9558a2_2' :
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'quay.io/biocontainers/bandage:0.8.1--hc9558a2_2' }"
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input:
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tuple val(meta), path(gfa)
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output:
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tuple val(meta), path('*.png'), emit: png
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tuple val(meta), path('*.svg'), emit: svg
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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def prefix = task.ext.prefix ?: "${meta.id}"
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"""
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Bandage image $gfa ${prefix}.png $args
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Bandage image $gfa ${prefix}.svg $args
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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bandage: \$(echo \$(Bandage --version 2>&1) | sed 's/^.*Version: //; s/ .*\$//')
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END_VERSIONS
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"""
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}
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