nf-core_modules/modules/sratools/prefetch/meta.yml
2022-05-10 12:29:42 +02:00

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1.2 KiB
YAML

name: sratools_prefetch
description: Download sequencing data from the NCBI Sequence Read Archive (SRA).
keywords:
- sequencing
- fastq
- prefetch
tools:
- sratools:
description: SRA Toolkit and SDK from NCBI
homepage: https://github.com/ncbi/sra-tools
documentation: https://github.com/ncbi/sra-tools/wiki
tool_dev_url: https://github.com/ncbi/sra-tools
licence: ["Public Domain"]
input:
- meta:
type: map
description: >
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- id:
type: val
description: >
A string denoting an SRA id.
- ncbi_settings:
type: file
description: >
An NCBI user settings file.
pattern: "*.mkfg"
output:
- meta:
type: map
description: >
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- sra:
type: directory
description: >
Directory containing the ETL data for the given SRA id.
pattern: "*/*.sra"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@Midnighter"