nf-core_modules/modules/lofreq/callparallel/meta.yml
Harshil Patel e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567)
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00

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1.4 KiB
YAML

name: lofreq_callparallel
description: It predicts variants using multiple processors
keywords:
- call
- variants
tools:
- lofreq:
description: Lofreq is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It's call-parallel programme predicts variants using multiple processors
homepage: https://csb5.github.io/lofreq/
documentation: https://csb5.github.io/lofreq/
doi: "10.1093/nar/gks918"
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- bam:
type: file
description: Sorted BAM file
pattern: "*.{bam}"
- bai:
type: file
description: BAM index file
pattern: "*.{bai}"
- fasta:
type: file
description: Reference genome FASTA file
pattern: "*.{fasta}"
- fai:
type: file
description: Reference genome FASTA index file
pattern: "*.{fai}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- vcf:
type: file
description: Predicted variants file
pattern: "*.{vcf}"
authors:
- "@kaurravneet4123"