mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
d1794d1934
* added template for tiddit/cov * test finished * quick fix to meta info * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * applying suggestions Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
23 lines
718 B
Text
23 lines
718 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { TIDDIT_COV } from '../../../../modules/tiddit/cov/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_tiddit_cov {
|
|
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ]
|
|
|
|
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
|
|
TIDDIT_COV ( input, fasta )
|
|
}
|
|
|
|
workflow test_tiddit_cov_no_ref {
|
|
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ]
|
|
|
|
TIDDIT_COV ( input, [] )
|
|
}
|