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ec10f98d55
* update to new cli args * remove bam index from tuple, not needed by program * bump picard version Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com>
14 lines
516 B
Text
14 lines
516 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PICARD_COLLECTWGSMETRICS } from '../../../../modules/picard/collectwgsmetrics/main.nf'
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workflow test_picard_collectwgsmetrics {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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]
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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PICARD_COLLECTWGSMETRICS ( input, fasta )
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}
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