nf-core_modules/tests/modules/picard/markduplicates/test.yml
Matthias Hörtenhuber e745e167c1
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00

20 lines
868 B
YAML

- name: picard markduplicates sorted bam
command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_sorted_bam -c ./tests/config/nextflow.config -c ./tests/modules/picard/markduplicates/nextflow.config
tags:
- picard
- picard/markduplicates
files:
- path: ./output/picard/test.MarkDuplicates.metrics.txt
contains:
- "1.0 97 97"
- path: ./output/picard/test.bam
- name: picard markduplicates unsorted bam
command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_unsorted_bam -c ./tests/config/nextflow.config -c ./tests/modules/picard/markduplicates/nextflow.config
tags:
- picard
- picard/markduplicates
files:
- path: ./output/picard/test.MarkDuplicates.metrics.txt
contains:
- "1.0 97 97"
- path: ./output/picard/test.bam