mirror of
https://github.com/MillironX/nf-core_modules.git
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b3e9b88e80
* Added: csi output to TABIX * Added: tests for csi * Fix tiddit/sv (#1580) * Fix fasta ref option for TIDDIT_SV * Add md5sum's to tiddit/sv tests Co-authored-by: Daniel Cooke <dcooke@well.ox.ac.uk> * Fix: prettier issues Co-authored-by: Daniel Cooke <daniel.cooke@invitae.com> Co-authored-by: Daniel Cooke <dcooke@well.ox.ac.uk>
32 lines
1.3 KiB
YAML
32 lines
1.3 KiB
YAML
- name: tabix tabix bed
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command: nextflow run ./tests/modules/tabix/tabix -entry test_tabix_tabix_bed -c ./tests/config/nextflow.config -c ./tests/modules/tabix/tabix/nextflow.config
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tags:
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- tabix
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- tabix/tabix
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files:
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- path: ./output/tabix/test.bed.gz.tbi
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md5sum: 5b40851ab6b8ccf7946313c86481c0df
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- name: tabix tabix gff
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command: nextflow run ./tests/modules/tabix/tabix -entry test_tabix_tabix_gff -c ./tests/config/nextflow.config -c ./tests/modules/tabix/tabix/nextflow.config
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tags:
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- tabix
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- tabix/tabix
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files:
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- path: ./output/tabix/genome.gff3.gz.tbi
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md5sum: f79a67d95a98076e04fbe0455d825926
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- name: tabix tabix vcf
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command: nextflow run ./tests/modules/tabix/tabix -entry test_tabix_tabix_vcf_tbi -c ./tests/config/nextflow.config -c ./tests/modules/tabix/tabix/nextflow.config
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tags:
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- tabix
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- tabix/tabix
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files:
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- path: output/tabix/test.vcf.gz.tbi
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md5sum: 36e11bf96ed0af4a92caa91a68612d64
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- name: tabix tabix vcf csi
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command: nextflow run ./tests/modules/tabix/tabix -entry test_tabix_tabix_vcf_csi -c ./tests/config/nextflow.config -c ./tests/modules/tabix/tabix/nextflow.config
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tags:
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- tabix
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- tabix/tabix
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files:
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- path: output/tabix/test.vcf.gz.csi
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md5sum: 5f930522d2b9dcdba2807b7da4dfa3fd
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