millironx/nf-core_modules
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nf-core_modules/software/samtools
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Harshil Patel d1c6082a66
Update modules required for rnaseq pipeline (#449) 
* Update HISAT2 build module

* Bump preseq version

* Fix tests

* Add meta.yml for preseq to fix linting

* Auto-detect --genomeSAindexNbases for smaller genomes

* Add placeholder to use human data for the tests

* Add CSI output option to samtools/index

* Fix samtools/index tests
2021-04-16 08:56:47 +01:00
..
faidx Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
fastq Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
flagstat Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
idxstats Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
index Update modules required for rnaseq pipeline (#449) 2021-04-16 08:56:47 +01:00
merge Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
mpileup Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
sort Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
stats Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
view Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00