mirror of
https://github.com/MillironX/nf-core_modules.git
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d1c6082a66
* Update HISAT2 build module * Bump preseq version * Fix tests * Add meta.yml for preseq to fix linting * Auto-detect --genomeSAindexNbases for smaller genomes * Add placeholder to use human data for the tests * Add CSI output option to samtools/index * Fix samtools/index tests
19 lines
677 B
YAML
19 lines
677 B
YAML
- name: preseq lcextrap single-end
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command: nextflow run ./tests/software/preseq/lcextrap -entry test_preseq_single_end -c tests/config/nextflow.config
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tags:
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- preseq
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- preseq/lcextrap
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files:
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- path: output/preseq/test.ccurve.txt
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md5sum: 1fa5cdd601079329618f61660bee00de
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- path: output/preseq/test.command.log
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- name: preseq lcextrap paired-end
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command: nextflow run ./tests/software/preseq/lcextrap -entry test_preseq_paired_end -c tests/config/nextflow.config
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tags:
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- preseq
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- preseq/lcextrap
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files:
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- path: output/preseq/test.ccurve.txt
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md5sum: 10e5ea860e87fb6f5dc10f4f20c62040
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- path: output/preseq/test.command.log
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