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f5d5926516
* Match target bed to input files * Intervals in getpileupsumamries * more interval updates * change targets in strelka * remove leftover channel * fix checksums * add new test vcfs * add new test vcfs * Update modules/freebayes/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> |
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| .. | ||
| applybqsr | ||
| applyvqsr | ||
| baserecalibrator | ||
| bedtointervallist | ||
| calculatecontamination | ||
| createsequencedictionary | ||
| createsomaticpanelofnormals | ||
| estimatelibrarycomplexity | ||
| fastqtosam | ||
| filtermutectcalls | ||
| gatherbqsrreports | ||
| genomicsdbimport | ||
| genotypegvcfs | ||
| getpileupsummaries | ||
| haplotypecaller | ||
| indexfeaturefile | ||
| intervallisttools | ||
| learnreadorientationmodel | ||
| markduplicates | ||
| mergebamalignment | ||
| mergevcfs | ||
| mutect2 | ||
| revertsam | ||
| samtofastq | ||
| splitncigarreads | ||
| variantfiltration | ||
| variantrecalibrator | ||