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59 lines
2 KiB
YAML
59 lines
2 KiB
YAML
name: dsh_splitbed
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description: Split features in gzipped BED format
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keywords:
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- bed
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tools:
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- dsh:
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description: |
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Reads, features, variants, assemblies, alignments, genomic range trees, pangenome
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graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3
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or later.
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homepage: https://github.com/heuermh/dishevelled-bio
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documentation: https://github.com/heuermh/dishevelled-bio
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params:
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- outdir:
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type: string
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description: |
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The pipeline's output directory. By default, the module will
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output files into `$params.outdir/<SOFTWARE>`
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- publish_dir_mode:
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type: string
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description: |
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Value for the Nextflow `publishDir` mode parameter.
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Available: symlink, rellink, link, copy, copyNoFollow, move.
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- enable_conda:
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type: boolean
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description: |
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Run the module with Conda using the software specified
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bed:
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type: file
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description: Features in gzipped BED format to split
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pattern: "*.{bed.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bed:
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type: file
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description: Features in split gzipped BED formatted files
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pattern: "*.{bed.gz}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@heuermh"
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