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https://github.com/MillironX/nf-core_modules.git
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0e9fd9370a
* Remove quotes around input reports variable for ktImportTaxonomy as prevents supplying multiple files * Add using prefix for output files * Tweak meta reflecting more flexible input database specification * Linting * Fix finding the correct directory * Update main.nf * Fix database inport * Prettier
48 lines
1.6 KiB
YAML
48 lines
1.6 KiB
YAML
name: krona_ktimporttaxonomy
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description: KronaTools Import Taxonomy imports taxonomy classifications and produces an interactive Krona plot.
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keywords:
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- plot
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- taxonomy
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- interactive
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- html
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- visualisation
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- krona chart
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tools:
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- krona:
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description: Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.
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homepage: https://github.com/marbl/Krona/wiki/KronaTools
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documentation: http://manpages.ubuntu.com/manpages/impish/man1/ktImportTaxonomy.1.html
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tool_dev_url:
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doi: https://doi.org/10.1186/1471-2105-12-385
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licence:
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test']
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- database:
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type: file
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description: |
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Path to a Krona taxonomy .tab file normally downloaded and generated by
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krona/ktUpdateTaxonomy. Custom taxonomy files can have any name, but
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must end in `.tab`.
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pattern: "*tab"
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- report:
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type: file
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description: "A tab-delimited file with taxonomy IDs and (optionally) query IDs, magnitudes, and scores. Query IDs are taken from column 1, taxonomy IDs from column 2, and scores from column 3. Lines beginning with # will be ignored."
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pattern: "*.{tsv}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- html:
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type: file
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description: A html file containing an interactive krona plot.
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pattern: "*.{html}"
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authors:
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- "@mjakobs"
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