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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
47 lines
1.2 KiB
YAML
47 lines
1.2 KiB
YAML
name: nanolyse
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description: DNA contaminant removal using NanoLyse
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keywords:
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- contaminant_removal
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tools:
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- nanolyse:
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description: |
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DNA contaminant removal using NanoLyse
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homepage: https://github.com/wdecoster/nanolyse
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documentation: https://github.com/wdecoster/nanolyse#nanolyse
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licence: ["GPL-3.0-or-later"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: |
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Basecalled reads in FASTQ.GZ format
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pattern: "*.fastq.gz"
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- fasta:
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type: file
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description: |
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A reference fasta file against which to filter.
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pattern: "*.fasta"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: Reads with contaminants removed in FASTQ format
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pattern: "*.fastq.gz"
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- log:
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type: file
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description: Log of the Nanolyse run.
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pattern: "*.log"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@yuukiiwa"
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