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378fa5fbb4
* initial version of gamma module * remove trailing whitespace * prettier fix * hardcode version number * Update modules/gamma/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/gamma/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/gamma/meta.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * update meta and prettier * add whitespaces * add fasta output and tests Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
17 lines
427 B
Text
17 lines
427 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GAMMA } from '../../../modules/gamma/main.nf'
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workflow test_gamma {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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db = [ file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true) ]
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GAMMA ( input, db )
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}
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