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24 lines
674 B
Text
24 lines
674 B
Text
#!/usr/bin/env nextflow
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nextflow.preview.dsl = 2
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params.out_dir = "test_output"
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params.fastqc_args = ''
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params.publish_dir_mode = "copy"
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params.intersect_args = '' //'-bed -c -f 0.20'
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include check_output from '../../../../tests/functions/check_process_outputs.nf' // params(params)
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include INTERSECT_BED from '../main.nf' params(params)
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// Define input channels
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ch_input_1 = Channel.fromPath('./input_data/A.bed')
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ch_input_2 = Channel.fromPath('./input_data/B.bed')
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def additional_params_map = [:]
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additional_params_map = [ s: "",
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f: 0.9 ]
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// Run the workflow
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workflow {
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INTERSECT_BED(ch_input_1, ch_input_2, additional_params_map)
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}
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