mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
51 lines
1.7 KiB
YAML
51 lines
1.7 KiB
YAML
name: bowtie_index
|
|
description: Create bowtie index for reference genome
|
|
keywords:
|
|
- index
|
|
- fasta
|
|
- genome
|
|
- reference
|
|
tools:
|
|
- bowtie:
|
|
description: |
|
|
bowtie is a software package for mapping DNA sequences against
|
|
a large reference genome, such as the human genome.
|
|
homepage: http://bowtie-bio.sourceforge.net/index.shtml
|
|
documentation: http://bowtie-bio.sourceforge.net/manual.shtml
|
|
arxiv: arXiv:1303.3997
|
|
params:
|
|
- outdir:
|
|
type: string
|
|
description: |
|
|
The pipeline's output directory. By default, the module will
|
|
output files into `$params.outdir/<SOFTWARE>`
|
|
- publish_dir_mode:
|
|
type: string
|
|
description: |
|
|
Value for the Nextflow `publishDir` mode parameter.
|
|
Available: symlink, rellink, link, copy, copyNoFollow, move.
|
|
- enable_conda:
|
|
type: boolean
|
|
description: |
|
|
Run the module with Conda using the software specified
|
|
via the `conda` directive
|
|
- singularity_pull_docker_container:
|
|
type: boolean
|
|
description: |
|
|
Instead of directly downloading Singularity images for use with Singularity,
|
|
force the workflow to pull and convert Docker containers instead.
|
|
input:
|
|
- fasta:
|
|
type: file
|
|
description: Input genome fasta file
|
|
output:
|
|
- index:
|
|
type: file
|
|
description: Bowtie genome index files
|
|
pattern: "*.ebwt"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@kevinmenden"
|