James A. Fellows Yates d30bf235b1 update: gunzip to include meta input tuple (#1082) ... * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Add bamUtil trimBam * Update modules/bamutil/trimbam/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/bamutil/trimbam/main.nf * Changes after code-review * YAML lint * update: add (optional) meta to input tuple * YAML linting * Update main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>		2021-11-21 12:41:03 +00:00
..
config	add bakta module (#1085)	2021-11-21 12:17:25 +00:00
modules	update: gunzip to include meta input tuple (#1082)	2021-11-21 12:41:03 +00:00
subworkflows/nf-core	Add thread option to samtools modules (#1069)	2021-11-18 22:24:47 +01:00
test_versions_yml.py	Subworkflow Infrastructure (#662)	2021-10-08 16:02:42 +01:00