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* 👌 IMPROVE: Add some pacbio test files * 🐛 FIX: Add Pacbio index to test_data.config * 👌 IMPROVE: Re add 10000 data test * 👌 IMPROVE: Add some pbindex * 🐛 FIX: Add pbi extension to files * 📦 NEW: Add galgal6 chr30 test data * 📦 NEW: Add bamtools module * 👌 IMPROVE: ignore test data * 👌 IMPROVE : add test bed files * 📦 NEW: Add gstama/merge module * 🐛 FIX: Change process label * 👌 IMPROVE: do not merge empty bed * 🐛 FIX: Change 0 lines files detection * 🐛 FIX: replace spaces by tab * 🐛 FIX: Remove tuple for report channel and add version output channel * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Update test * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Fix Typos * 👌 IMPROVE: Updates + clean code - Update to last versions.yml file - Better output channels - Update meta.yml * 👌 IMPROVE: Correct typo * 👌 IMPROVE: Remove included filelist creation and add an input channel * 🐛 FIX: Correct typo * 👌 IMPROVE: Add filelist file * 🐛 FIX: tama_merge.py emit a version number * Update modules/gstama/merge/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * 👌 IMPROVE: Update meta.yml * Update main.nf * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
14 lines
583 B
YAML
14 lines
583 B
YAML
- name: gstama merge test_gstama_merge
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command: nextflow run tests/modules/gstama/merge -entry test_gstama_merge -c tests/config/nextflow.config
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tags:
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- gstama
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- gstama/merge
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files:
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- path: output/gstama/test_merged.bed
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md5sum: 60ec34e1ff9655d4ce2e83d3f4bbf448
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- path: output/gstama/test_merged_gene_report.txt
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md5sum: 7029fd183dfd905a233403cfbe44722a
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- path: output/gstama/test_merged_merge.txt
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md5sum: 4279e59ed5739ce4f2f811568962893f
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- path: output/gstama/test_merged_trans_report.txt
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md5sum: 97d8346d9eb9da140941656c3a3325cd
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