mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
35 lines
1.3 KiB
YAML
35 lines
1.3 KiB
YAML
- name: bwa mem single-end
|
|
command: nextflow run ./tests/modules/bwa/mem -entry test_bwa_mem_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- bwa
|
|
- bwa/mem
|
|
files:
|
|
- path: ./output/bwa/test.bam
|
|
- path: ./output/index/bwa/genome.bwt
|
|
md5sum: 0469c30a1e239dd08f68afe66fde99da
|
|
- path: ./output/index/bwa/genome.amb
|
|
md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
|
|
- path: ./output/index/bwa/genome.ann
|
|
md5sum: c32e11f6c859f166c7525a9c1d583567
|
|
- path: ./output/index/bwa/genome.pac
|
|
md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
|
|
- path: ./output/index/bwa/genome.sa
|
|
md5sum: ab3952cabf026b48cd3eb5bccbb636d1
|
|
|
|
- name: bwa mem paired-end
|
|
command: nextflow run ./tests/modules/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- bwa
|
|
- bwa/mem
|
|
files:
|
|
- path: ./output/bwa/test.bam
|
|
- path: ./output/index/bwa/genome.bwt
|
|
md5sum: 0469c30a1e239dd08f68afe66fde99da
|
|
- path: ./output/index/bwa/genome.amb
|
|
md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
|
|
- path: ./output/index/bwa/genome.ann
|
|
md5sum: c32e11f6c859f166c7525a9c1d583567
|
|
- path: ./output/index/bwa/genome.pac
|
|
md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
|
|
- path: ./output/index/bwa/genome.sa
|
|
md5sum: ab3952cabf026b48cd3eb5bccbb636d1
|