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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
31 lines
1.1 KiB
Text
31 lines
1.1 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { TABIX_TABIX as TABIX_BED } from '../../../../modules/tabix/tabix/main.nf' addParams( options: ['args': '-p bed'] )
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include { TABIX_TABIX as TABIX_GFF } from '../../../../modules/tabix/tabix/main.nf' addParams( options: ['args': '-p gff'] )
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include { TABIX_TABIX as TABIX_VCF } from '../../../../modules/tabix/tabix/main.nf' addParams( options: ['args': '-p vcf'] )
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workflow test_tabix_tabix_bed {
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input = [ [ id:'B.bed' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['test_bed_gz'], checkIfExists: true) ]
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]
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TABIX_BED ( input )
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}
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workflow test_tabix_tabix_gff {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['genome_gff3_gz'], checkIfExists: true) ]
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]
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TABIX_GFF ( input )
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}
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workflow test_tabix_tabix_vcf {
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input = [ [ id:'test.vcf' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true) ]
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]
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TABIX_VCF ( input )
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}
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